Caltech ERATO Kitano Systems Biology Workbench- Presentation and demonstration on the model representation language, Systems Biology Markup Language (SBML) and development of a framework, Systems Biology Workbench (SBW).

CellML, Physiome Sciences - Explanation of the XML-based mark-up language that is designed to facilitate the creation and exchange of biological models even if modelers are using different model-building software.

COPASI - Pedro Mendes and Stefan Hoops, Virginia Bioinformatics Institute- Demonstration of the Complex Pathway Simulator

ECELLProject - Masaru Tomita - Presentation of the cell software package for cellular and biochemical modeling and simulation.

JDesigner and Jarnac - Herbert Sauro, Keck Graduate Institute - Demonstrations and tutorials will be given on the use and appliciation of the visual network design tool, JDesigner and script based simulation engine Jarnac via the Systems Biology Workbench.

MCell & DReAMM - A Microphysiological Modeling Environment - Joel Stiles, Pittsburgh Supercomputing Center, and Thomas Bartol, The Salk Institute - Tutorial on model design, Monte Carlo simulation, and visualization of spatially realistic microphysiological models.

PathwayPrism(tm) - Physiome Sciences- Provides a powerful platform for generating new insights from pathway analysis by integrating biological data with simulation software.

ProcessDB - Integrative BioInformatics - a web-based or stand alone tool built on an Oracle database that allows cell biologists to construct, quantify, manage, modify and compare mechanistic cell biological hypotheses and export the corresponding models to third party differential equation solvers and optimizers.

SigPath - Fabien Campagne, Ravi Iyengar and Harel Weinstein, Mount Sinai School of Medicine - Demonstration of an information system designed to support quantitative studies on the signaling pathways and networks of the cell .

VCell - Jim Schaff and Ion Moraru, University of Connecticut Health Center - Demonstration of the Java based, internet accessible Virtual Cell Modeling and Simulation Framework.